PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G104700.1

Common Name

B456_006G104700, LOC105799141

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 377aa MW: 41767 Da PI: 7.8719

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G104700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.2e-07	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Gorai.006G104700.1 220 HYCQVCGKGFKRDANLRMHMRAH 242 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.82E-6	218	245	No hit	No description
SMART	SM00355	0.0034	220	242	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-7	220	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.653	220	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	222	242	IPR007087	Zinc finger, C2H2
SMART	SM00355	62	277	310	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	24	315	337	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MISDTIPSSF PNASQALPMY PMTDHQDHIN VPYSCLEAPG SGSDLAPSTS LLYNLSILED 60 KVNQLQSLVS NLISPDQIHP ESTGSLAIAS MDSLVQEIIG AASSMGLVSQ HMSLGTTSGN 120 NNGISKQPNF TDDFAGGNLV QERGQGSYPS VDQTFSWYDR NSIHNNRSLQ VGNADKLKER 180 KELGEMVQRS EISEGSQGDA GTNYDIVELD AEDLLAKYTH YCQVCGKGFK RDANLRMHMR 240 AHGDEYKTNA ALVNPMKSHE GSSNGMGNCS TKFPKRYSCP YEGCRWNQKH ANFQPLKSMI 300 CVKNHYKRSH CPKMYVCKRC NRKQFSLLSD LRTHEKHCGD LRWQCSCGNT FSRKDKLMGH 360 VALFVGHRPV VAHSLH*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MISDTIPSSF PNASQALPMY PMTDHQDHIN VPYSCLEAPG SGSDLAPSTS LLYNLSILED  60
KVNQLQSLVS NLISPDQIHP ESTGSLAIAS MDSLVQEIIG AASSMGLVSQ HMSLGTTSGN  120
NNGISKQPNF TDDFAGGNLV QERGQGSYPS VDQTFSWYDR NSIHNNRSLQ VGNADKLKER  180
KELGEMVQRS EISEGSQGDA GTNYDIVELD AEDLLAKYTH YCQVCGKGFK RDANLRMHMR  240
AHGDEYKTNA ALVNPMKSHE GSSNGMGNCS TKFPKRYSCP YEGCRWNQKH ANFQPLKSMI  300
CVKNHYKRSH CPKMYVCKRC NRKQFSLLSD LRTHEKHCGD LRWQCSCGNT FSRKDKLMGH  360
VALFVGHRPV VAHSLH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484996.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBL	A0A0D2Q758	0.0	A0A0D2Q758_G
STRING	VIT_06s0061g00780.t01	1e-134	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5752	25	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-111	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G104700.1
Entrez Gene	105799141

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]